PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g101280.1
Common NameMTR_0041s0110, MTR_7g101280, MtrDRAFT_AC148995g9v2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 649aa    MW: 72449.2 Da    PI: 8.3317
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g101280.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.32.2e-21131232199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f k+lt+sd+++ g ++ p+ +ae+       + +++ + ++  +d +g++W +++ yr++++r++lt+GW+ Fv++++L +gD++vF   +++
  Medtr7g101280.1 131 FAKTLTQSDANNGGGFSCPRYCAETLfprldySANPPLQ-DIFPKDVHGEKWHFRHVYRGTPKRHLLTTGWSPFVSDKKLASGDSIVFL--RSE 221
                      89*********************999****995566664.9************************************************..448 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++ l+v+++r+
  Medtr7g101280.1 222 NGDLHVGIRRA 232
                      8889*****97 PP

2Auxin_resp93.82.8e-31304385283
       Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      ++  +++++F+vvY+Pr++t+eF vk++ +  al++++++GmRfkma+etedss++++  Gtv++v+++dp +W++S Wr+L+
  Medtr7g101280.1 304 VRLGTNMQPFDVVYYPRSGTPEFFVKTSLIGMALQIRWCPGMRFKMAIETEDSSRISWfIGTVASVQAADP-SWSDSMWRLLE 385
                      5667899****************************************************************.********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-36121235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-27126234IPR015300DNA-binding pseudobarrel domain
CDDcd100178.81E-19130231No hitNo description
PfamPF023624.0E-19131232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464131233IPR003340B3 DNA binding domain
SMARTSM010193.1E-16131233IPR003340B3 DNA binding domain
PfamPF065078.7E-24306384IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MKEKRKGCSP TEMNMESKKK LKNVNKSVDP QLWHAVAGGM VQMPEVNSQV FYFPQGHAEH  60
ACEPVNFSSY SKIPSFIPCR VEAIRYMANH ETDEVYAKLR LVPMNINQVS FDNDGVAGIN  120
VSETKDKHQS FAKTLTQSDA NNGGGFSCPR YCAETLFPRL DYSANPPLQD IFPKDVHGEK  180
WHFRHVYRGT PKRHLLTTGW SPFVSDKKLA SGDSIVFLRS ENGDLHVGIR RAKRRNNVGV  240
DPLSGWKSGS GIGICAAPPY GGFPSFSGEE DNKLRRNGKG NGLLISDGMM GRGKVKALEV  300
IEAVRLGTNM QPFDVVYYPR SGTPEFFVKT SLIGMALQIR WCPGMRFKMA IETEDSSRIS  360
WFIGTVASVQ AADPSWSDSM WRLLEVTWDE PELLKNVKRV NPWQVEIVSN MPSIPLSPFI  420
PPRKKLRLPQ LPDFPIDGQF PMPTFPNNLL SPNIPIFYLP ETSPAGMQGA RHGHFGVTLP  480
DFHNLPLGLF QPSFQQPFNN IATMPMTVPN NPALQKPNTS ENVSCSHSIS TSAQSSEKPD  540
HAKPHQLVLF GQTIQVDAGN ENSEKKMSNH LSDLHLQGLS SRSSDARFEW NAENQHEETL  600
AGETLEMKHS DFIRKARRLT ILMDSTSGAT TEDQQEKKEN HQFNCRAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-701540634388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1489950.0AC148995.2 Medicago truncatula chromosome 7 clone mth2-49l23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625635.20.0auxin response factor
RefseqXP_013443106.10.0auxin response factor
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLQ2HV560.0Q2HV56_MEDTR; Auxin response factor
STRINGGLYMA10G06080.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-158auxin response factor 16
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]